Réseau Scientifique PhyloMAP



  • Grenfell, B. T., Pybus, O. G., Gog, J. R., Wood, J. L., Daly, J. M., Mumford, J. A., & Holmes, E. C. (2004). Unifying the epidemiological and evolutionary dynamics of pathogens. science, 303(5656), 327-332.
  • Frost, S. D., Pybus, O. G., Gog, J. R., Viboud, C., Bonhoeffer, S., & Bedford, T. (2015). Eight challenges in phylodynamic inference. Epidemics, 10, 88-92.
  • Stack, J. C., Welch, J. D., Ferrari, M. J., Shapiro, B. U., & Grenfell, B. T. (2010). Protocols for sampling viral sequences to study epidemic dynamics. Journal of the Royal Society Interface, 7(48), 1119-1127.


  • BEAST 1: a cross-platform program for Bayesian phylogenetic analysis of molecular sequences using MCMC.
  • BEAST 2: a rewrite of BEAST 1, placing a greater emphasis on modularity.
  • Nextstrain: an open-source toolkit enabling the bioinformatics and visualization of viral outbreaks.